It was recommended to me to post this bug report.
On test server I made a multiclass Ranger. 6 Levels of Ranger with archer path applied, then levels in Shaman. I used the two Ranger bonus feats to take ambidexterity and two weapon fighting. Later in the build at higher character levels I took Improved Two Weapon fighting. After the level up the feats does not show on character sheet or apply the extra attack, but used up a feat slot at level up. I was informed on discord this could be a an error due to a code preventing the archer path from recieving the feat at ranger lvl 9. This was on a build of 6 ranger(archer) multiclassed with Shaman lvls. The Shaman levels accuractly applied the archer path feats, but the shaman synergy and ranger path seem to be interfering with each other.